Scientist drilling ancient bone to extract DNA, symbolizing fusion of archaeology, genetics, and modern discovery.

From Ancient Genes to Immune Storms: The New Story of Multiple Sclerosis

A $3 million Breakthrough Prize has honored scientists whose work transformed how we understand multiple sclerosis (MS): the disease once blamed on "mystery autoimmunity" now appears tied to a common virus - and to ancient genetic legacies. Meanwhile, new research in Brain Communications uncovers how immune cells in the cerebrospinal fluid interact dynamically with neuronal damage markers during MS. Together these discoveries reveal a system that is neither purely viral nor immune nor genetic - but a living dialogue between ancestry, infection, and the brain's own defense fields.

By Lorans I. Hedgecock November 5, 2025 in Cognitive Science


For decades, multiple sclerosis baffled researchers. The disease, which strips protective myelin from nerve fibers, seemed to emerge from nowhere - often in young adults whose immune systems suddenly turned against their own brain and spinal cord. Doctors knew inflammation and neurodegeneration were involved, yet the origin of that misfire remained elusive.

Then came the turning point. In 2022, Harvard epidemiologists analyzing more than 10 million U.S. military health records found that infection with Epstein - Barr virus (EBV) preceded almost every new case of MS. The evidence was so strong that the discovery has now been honored with the 2025 Breakthrough Prize in Life Sciences, shared by Alberto Ascherio, Kassandra Munger, and colleagues. Their findings shifted MS from a disease of spontaneous immune chaos to a slow viral cascade - a common infection that, in genetically susceptible individuals, awakens a decades-long autoimmune response.

The news electrified the field. It suggested that vaccines or antiviral therapies could one day prevent MS altogether. But the picture grew even more complex when geneticists turned the clock back thousands of years.

A recent study of ancient human DNA, published by the University of Cambridge and reported by AP News, found that genetic variants increasing MS risk were once advantageous to ancestral Europeans, boosting immune vigilance against infections carried by livestock and dense early settlements. Those same overactive immune pathways - especially variants in the HLA-DRB1 region - now backfire in the modern world, where chronic viral exposure and improved sanitation change how our immune system calibrates threat. In effect, natural selection optimized our ancestors to survive pathogens but left descendants vulnerable to autoimmunity.

If ancient genes set the stage and viruses pull the trigger, what keeps the disease advancing? That's where the latest Brain Communications study enters the story.

Sina Zaic and colleagues at the Medical University of Vienna performed detailed immune profiling of cerebrospinal fluid (CSF) from 63 participants: patients with relapsing-remitting MS, primary-progressive MS, and control groups with other neurological conditions. They measured markers of neural damage - neurofilament light chain (NfL) and glial fibrillary acidic protein (GFAP) - alongside immune-cell populations, from T cells to monocytes.

The team discovered that during MS relapses, spikes in naïve CD4+ T cells closely tracked with rising NfL levels, a sign of acute axonal injury. Meanwhile, age-related shifts in monocyte subsets (especially CD14+CD16+ cells) hinted at how the innate immune system evolves across the lifespan of MS. Even more intriguing, classical monocytes correlated with GFAP levels in controls - suggesting these cells quietly support glial homeostasis even outside disease.

Such data redefine MS as a dynamic field, not a static autoimmune battle. The immune system and neurons engage in continuous feedback: a living dialogue where damage signals recruit cells, and cells in turn shape damage patterns. Rather than a war zone, the central nervous system resembles a negotiation table - its outcomes dependent on timing, context, and genetic tuning.

Historically, CSF studies in MS focused on oligoclonal bands - immunoglobulin signatures first identified in the 1950s that confirmed intrathecal immune activation. Today's single-molecule assays build on that legacy, detecting proteins at attomolar levels and uncovering links between specific cell types and tissue damage in real time. The field is moving from snapshot to dynamics: from detecting presence to tracking interaction.

Put together, the modern story of MS reads like a centuries-long dialogue between evolution, infection, and consciousness. Ancient genomes gave us a fierce immune instinct; a virus common to nearly all humans turns that instinct inward; and today's technologies allow us to see the very moment the dialogue crosses from defense to destruction.

Through the DSA lens, these discoveries illustrate the interplay between biological fields and cognitive structures. In DSA terms, the immune system represents a distributed field of recognition - an organism's embodied awareness of self versus non-self. When that field becomes oversensitized through genetic amplification (L4 field over-activation), and when a trigger virus such as EBV resonates with those pathways, the system enters feedback instability. Myelin sheaths become collateral targets in a field seeking coherence. The result is not mere inflammation but a cognitive-structural distortion - a disruption in the body's communication architecture between perception and protection.

Seen this way, MS is a mirror of modern human evolution: our expanded conscious complexity demands a more tolerant immune field, yet our ancient defensive wiring still operates in binary logic - attack or ignore. Future therapies may therefore need to work not only on viral elimination or immunosuppression but on resonant re-patterning of the immune-cognitive interface itself.

The $3 million prize and the CSF study both point to the same realization: MS is not a single disease but a systemic conversation gone awry. Each discovery - from ancient genes to viral triggers to cellular dialogues - adds a line to that conversation. And as science learns to listen better, the future of MS research may be less about fighting a war and more about restoring harmony to the human field.


References

Sina Zaic, Theresa Knig, Markus Ponleitner, Florian Gfllner, Sara Silvaieh, Nik Krajnc, Tandis Parvizi, Stefan Macher, Barbara Kornek, Paulus Rommer, at al. (2025). Dynamic relationship between cerebrospinal fluid immune cells and tissue damage markers in multiple sclerosis. [Brain Communications] https://doi.org/10.1093/braincomms/fcaf3...
Alberto Ascherio, Kassandra Munger et al. (2022). Longitudinal analysis reveals Epstein-Barr virus infection precedes multiple sclerosis by years.. [American Association for the Advancement of Science (AAAS)] https://doi.org/10.1126/science.abj8222...
Nicoletta Lanese (2025). $3 million Breakthrough Prize goes to scientists that completely changed our understanding of multiple sclerosis.. [Live Science] https://www.livescience.com/health/virus...
LAURAN NEERGAARD (2023). Ancient human DNA hints at why multiple sclerosis affects so many northern Europeans today.. [Associated Press] https://apnews.com/article/multiple-scle...
Florian Deisenhammer, Henrik Zetterberg, Brit Fitzner, Uwe K Zettl (2019). The Cerebrospinal Fluid in Multiple Sclerosis. [Frontiers in Immunology] https://pmc.ncbi.nlm.nih.gov/articles/PM...

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